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Introduction

Example of Hexokinase

This graphics engine is built with the help of SDL2, Bullet physics, OpenGL and some more stuff.

File:Opengl Tiny.jpeg


File:SDL logo20 sm.png

Projects

LearningPlatform

Glycolysis

This is intended to be a labtool helping educating university students in metabolism. It is an interactive learning tool for teaching methabolism.

  • Platform: PC, linux Ubuntu
  • Architecture: 64 bit linux running on a 64 bit hardware.
  • Graphics: Gallium 0.4 on AMD PITCAIRN (DRM 2.43.0, LLVM 3.8.0
  • OS: Linux Ubuntu 14.xxx
  • Software used
    • OpenGL (Open Graphics Library) API for rendering 3D vector graphics.
    • SDL 2.0
    • Bullet physics (bullet-2.82-r2704)
    • Glew
    • OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specification and released under the MIT license.
    • Lua (lua-5.1)
    • Freetype (freetype-2.4.12)
    • Assimp (assimp-3.3.1)
    • IMGUI (imgui, v1.51 WIP)
    • pthread (POSIX thread solution/libwinpthread (port to windows)
  • Planning to use
    • RDKit

Molecules

BioMolCraft (Date:19/11-18)

Preparing updates for coming use in a lab (Dec 4 -18).

DoD - list of tasks to fulfill before the event:

  • Reset/Restart
    • clean load ?
    • [Done] only restart test
  • [Done] Randomize positions
  • [Done] Cleanup menus
    • [Done] Remove/disable all menu selections that is not in real use of the actual test
  • [Partly] Cleanup bugs
    • make sure no bugs are left, this can only be done with thorough testing
    • some kind of memory leak when restarting several times.
    • [Partly] the exit dialog needs to be removed and replaced by ImGui, since it is a long delay on current solution
    • [Done] make sure only molecules are moveable objects
  • better mouse ptr precision (low prio on this task)
  • [Done] Windows 10 (a must if the lab no longer have linux)
  • [Done] Splash screen when starting up the program, either use Plane, or ImGui (low prio)

BioMolCraft 2.0 (Date:2/7-19)

  • big molecules big footprint in memory, how to handle this?
  • raytracing, can it be used in animating the process?

DoD- list of tasks to fulfill before october

  • make GameLogic2 work again,
- part of this is to have testing framework up and running for stage class

BioMolCraft 2.1 (Date:24/11 -21)

Issues

  • links to external molecule page doesn't work anymore. The link has changed.
  • drag and drop of molecule names works poorly

Any time to fix these problems?

Other

Ideas

sequence Diagram of LP

An error occured in the PlantUML extension.
command 'java -jar plantuml.jar -charset UTF-8 -o "/home/u230599544/domains/vhundsport.se/public_html/LPWiki/images" "/home/u230599544/domains/vhundsport.se/public_html/LPWiki/images/uml-9565814d5d564fa898dd6111b94fae0b-46ff9813722c7e820cb6fd7656ee65c5.uml"' returned status code=127

Building for Windows 7

Building for Windows 10

  • Add freetype
 freetype download


  • build result in linux:
./objs/libfreetype.la
./objs/.libs/libfreetype.lai
./objs/.libs/libfreetype.so
./objs/.libs/libfreetype.la
./objs/.libs/libfreetype.so.6.10.1
./objs/.libs/libfreetype.a
./objs/.libs/libfreetype.so.6
peter@ironman:~/projects/LP/freetype-2.4.12$


  • Build from powershell works
  • Text works, menus works, Gtest?


  • building lua

should be built from powershell, needs to be manually built for each source code file, see script I made included in the src folder. then link it all by running >make mingw (from powershell)



  • mingw libs needed to be included in Debug folder when running the program:
    • libwinpthread-1.dll => /c/MinGW/mingw64/bin/libwinpthread-1.dll (0x64940000)
    • libgcc_s_seh-1.dll => /c/MinGW/mingw64/bin/libgcc_s_seh-1.dll (0x61440000)
    • libstdc++-6.dll => /c/MinGW/mingw64/bin/libstdc++-6.dll (0x6fc40000)


Binaries for Windows 10

Building for Linux Ubuntu 14.xx

Building for Linux Ubuntu 16.04

Building for Linux OpenSuse 13.2


Download Glycolysis binaries for openSuse 13.2

Building for Linux CentOS Release 6.7

Binaries for CentOS Release 6.7

Building for Linux CentOS Release 7.0

  • glxinfo
  • glxgear
  • LD_LIBRARY_PATH = /home/peter/projects/tmp/lib:/home/peter/projects/tmp/libOS
>export LD_LIBRARY_PATH=/home/peter/projects/tmp/lib:/home/peter/projects/tmp/libOS

Download binaries for CenOS 7.0

Other

OLD Getting started

transfer files on internal network

Media:Client-server.tar.gz


Resources

Media:GLycolysis-process.png

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